Package: oCELLoc Title: Predicts Suitable Cell Types in Spatial Transcriptomics and scRNA-seq Data Version: 1.0.0 Authors@R: c( person(given = "Afeefa", family = "Zainab", email = "afeeffazainab@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3357-8661")), person("Vladyslav", "Honcharuk", email = "vladyslav.s.honcharuk@gmail.com", role = "aut", comment = c(ORCID = "0000-0002-7464-500X")), person("Alexis", "Vandenbon", email = "alexisvdb@infront.kyoto-u.ac.jp", role = "aut", comment = c(ORCID = "0000-0003-2180-5732"))) Description: Picks the suitable cell types in spatial and scRNA-seq data using shrinkage methods. The package includes curated reference gene expression profiles for human and mouse cell types, facilitating immediate application to common spatial transcriptomics or scRNA datasets. Additionally, users can input custom reference data to support tissue- or experiment-specific analyses. License: MIT + file LICENSE URL: https://doi.org/10.64898/2025.12.11.693812 Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.3 Imports: glmnet, utils, stats, ggplot2, rlang, reshape2, Suggests: testthat (>= 3.0.0), knitr, rmarkdown LazyData: true Depends: R (>= 3.5.0) Config/pak/sysreqs: libicu-dev Repository: https://afeefa-zainab.r-universe.dev Date/Publication: 2025-12-17 06:21:45 UTC RemoteUrl: https://github.com/afeefa-zainab/ocelloc RemoteRef: HEAD RemoteSha: f4b22bb7e46a22377a636e8158733339f6a8df92 NeedsCompilation: no Packaged: 2026-06-21 07:38:31 UTC; root Author: Afeefa Zainab [aut, cre] (ORCID: ), Vladyslav Honcharuk [aut] (ORCID: ), Alexis Vandenbon [aut] (ORCID: ) Maintainer: Afeefa Zainab